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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9937513_9945534_F

Intron Information:

Intron Rank:
139698
Intron Class:
major
Intron Phase:
Intron Coordinates:
9937513 - 9945534
Intron Length:
8022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGACCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCTCTCTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.4
0.44
0.9
61.6
34.7
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
62.6
0.38
1.7
74.3
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025108
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037677
9936811 - 9945760
8950