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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9937513_9956315_F

Intron Information:

Intron Rank:
139700
Intron Class:
major
Intron Phase:
Intron Coordinates:
9937513 - 9956315
Intron Length:
18803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TTTGCCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
83.3
0.75
0.8
77.7
29.4
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
69.7
0.7
1.8
88.6
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025108
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047741
9936811 - 9956986
20176