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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_1106210_1108793_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1106210 - 1108793
Intron Length:
2584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACTAT
U12 Branch Point Sequence:
TATTCTACACTT
Flanking Amino Acid:
KLLSELPKADQNICSHGSYF
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
54.3
0.11
1.3
53.1
42.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
46.9
-0.1
2
70.19
41.1

Associated Gene:

Gene:
TMEM126A
Ensembl Gene ID:
ENSAPLG00000003578
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003685
1104677 - 1110300
5624