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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_1109707_1110064_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1109707 - 1110064
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTTCTACCACT
Flanking Amino Acid:
ALPVNASLAARYASSPLPGR
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
82
0.72
0.7
81.5
30.5
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
47.4
-0.1
2.2
73.99
42.7

Associated Gene:

Gene:
TMEM126A
Ensembl Gene ID:
ENSAPLG00000003578
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003685
1104677 - 1110300
5624