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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_122889_132932_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
122889 - 132932
Intron Length:
10044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GACTCCTTATTT
Flanking Amino Acid:
EEMGVIPSKRRVERKERARL
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.3
0.84
0.6
83.5
24.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
63.7
0.51
1.6
73.84
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003730
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025640
80714 - 731286
650573
ENSAPLT00000041688
44591 - 730946
686356
ENSAPLT00000003813
81770 - 470169
388400
ENSAPLT00000038000
80714 - 741600
660887
ENSAPLT00000028568
81770 - 731286
649517
ENSAPLT00000026832
80714 - 841857
761144
ENSAPLT00000047181
81770 - 841857
760088