Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_288400_304130_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

288400 - 304130

Intron Length:

15731

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

ATTCCCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

ATTGCTTGCATT

Flanking Amino Acid:

ELQRGDQILSVNGIDLRGAT

Intron Amino Acid Position:

397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

80.4

0.68

0.8

74.1

30.2

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

48.1

-0

70.57

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003730

Chromosome:

PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025640

80714 - 731286

650573

ENSAPLT00000041688

44591 - 730946

686356

ENSAPLT00000003813

81770 - 470169

388400

ENSAPLT00000038000

80714 - 741600

660887

ENSAPLT00000028568

81770 - 731286

649517

ENSAPLT00000026832

80714 - 841857

761144

ENSAPLT00000047181

81770 - 841857

760088