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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_315206_358104_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
315206 - 358104
Intron Length:
42899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATGT
5'SS Class:
major
3'SS Sequence:
TTTGGTCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTCTATTC
Flanking Amino Acid:
KHMLVEDDYTSHSQHSTATR
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.3
72.5
39.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
76.1
0.59
1
69.6
40.8
Minor 5ss
35.1
-1.7
3.1
48.5
47
Minor BPS
57.5
0.21
1.9
74.69
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003730
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047181
81770 - 841857
760088