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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_398231_419739_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
398231 - 419739
Intron Length:
21509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGTAT
U12 Branch Point Sequence:
TTTTTCTTGAAG
Flanking Amino Acid:
GGAAAEDGRLRVNDCILRVN
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
59.8
0.24
1.5
60.1
46.3
Major PPT
78.4
0.64
1
79.6
32.8
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
70.3
0.49
1.5
75.29
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003730
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025640
80714 - 731286
650573
ENSAPLT00000041688
44591 - 730946
686356
ENSAPLT00000003813
81770 - 470169
388400
ENSAPLT00000038000
80714 - 741600
660887
ENSAPLT00000028568
81770 - 731286
649517
ENSAPLT00000026832
80714 - 841857
761144
ENSAPLT00000047181
81770 - 841857
760088