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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_467966_470133_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
467966 - 470133
Intron Length:
2168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTCTGATTT
Flanking Amino Acid:
LHTSSFHLPQVNGTEIEYEF
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.7
85.8
28.6
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
59.5
0.38
1.7
78.82
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003730
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003813
81770 - 470169
388400