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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_89510_90507_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89510 - 90507
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ACTTCTTGATCC
Flanking Amino Acid:
FPDKFGSCVPHTTRPKRDYE
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.3
81.8
38.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
82.1
0.72
0.9
78
35.5
Minor 5ss
40.7
-1
2.8
50.8
39
Minor BPS
54.6
0.12
1.7
65.34
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003730
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025640
80714 - 731286
650573
ENSAPLT00000041688
44591 - 730946
686356
ENSAPLT00000003813
81770 - 470169
388400
ENSAPLT00000038000
80714 - 741600
660887
ENSAPLT00000028568
81770 - 731286
649517
ENSAPLT00000026832
80714 - 841857
761144
ENSAPLT00000047181
81770 - 841857
760088