About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_91189_100773_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91189 - 100773
Intron Length:
9585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCAGCTTCAATC
Flanking Amino Acid:
SNASDSESSYRGQEDCILSY
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
78.8
0.65
0.8
78.2
29
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
51.4
0.02
1.6
58.76
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003730
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026832
80714 - 841857
761144
ENSAPLT00000025640
80714 - 731286
650573
ENSAPLT00000047181
81770 - 841857
760088
ENSAPLT00000041688
44591 - 730946
686356
ENSAPLT00000038000
80714 - 741600
660887