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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_941088_960321_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
941088 - 960321
Intron Length:
19234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTCC
5'SS Class:
major
3'SS Sequence:
CACTTATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTATTT
Flanking Amino Acid:
ENYAVETKIKQSHGRCPSHK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.5
39
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.3
0.66
0.9
73
35.9
Minor 5ss
36.6
-1.5
3.5
50.4
46.4
Minor BPS
62.1
0.46
1.8
82.67
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030297
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023952
854848 - 1103087
248240