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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_960421_983828_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
960421 - 983828
Intron Length:
23408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
GQENLQKTLEAADSNGSEGS
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.2
0.77
0.6
82.6
22
Minor 5ss
32.1
-2
3.1
41.4
44.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030297
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023952
854848 - 1103087
248240