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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000232.1_983975_1088193_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
983975 - 1088193
Intron Length:
104219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTACAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCCTCTTTACA
Flanking Amino Acid:
FKSSLFQALLDIQEFYEVTL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.4
0.48
1
67.3
37.3
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
62.5
0.39
1.6
72.39
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030297
Chromosome:
PEDO01000232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023952
854848 - 1103087
248240