Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000233.1_109681_110602_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109681 - 110602

Intron Length:

922

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

GCATTTTTTTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTCTCATCACT

Flanking Amino Acid:

IILVDDYSNDPDDGALLGKI

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.3

79.7

35.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

71.3

0.48

1.1

75.1

38.7

Minor 5ss

38.9

-1.2

2.8

39.1

Minor BPS

55.4

0.25

82.09

39.1

Associated Gene:

Gene:

GALNT2

Ensembl Gene ID:

ENSAPLG00000002130

Chromosome:

PEDO01000233.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002298

79681 - 119596

39916