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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000233.1_110671_111234_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110671 - 111234
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACCT
5'SS Class:
major
3'SS Sequence:
TTCATGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTATTGAATG
Flanking Amino Acid:
ARSALLRTVVSVLKKSPSHL
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
63.6
40.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
1
72.6
42.2
Minor 5ss
40.8
-1
3.1
58.3
45.8
Minor BPS
53.3
-0
1.7
60.94
41.4

Associated Gene:

Gene:
GALNT2
Ensembl Gene ID:
ENSAPLG00000002130
Chromosome:
PEDO01000233.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002298
79681 - 119596
39916