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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000233.1_111334_113354_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111334 - 113354
Intron Length:
2021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CTACATTCAAAT
Flanking Amino Acid:
DRNIPDTRHDQCQRKQWRID
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
45.7
-0.2
1.8
61.15
42

Associated Gene:

Gene:
GALNT2
Ensembl Gene ID:
ENSAPLG00000002130
Chromosome:
PEDO01000233.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002298
79681 - 119596
39916