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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000233.1_113509_118492_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113509 - 118492
Intron Length:
4984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGCAG
5'SS Class:
major
3'SS Sequence:
TTTTCTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTTTCTATT
Flanking Amino Acid:
KAQSVETLPPGKVRWQDFDQ
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
53.1
45.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86
0.81
0.7
82.2
28
Minor 5ss
41.7
-0.9
3.2
55.3
48.9
Minor BPS
49.7
0.06
1.8
71.98
39.2

Associated Gene:

Gene:
GALNT2
Ensembl Gene ID:
ENSAPLG00000002130
Chromosome:
PEDO01000233.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002298
79681 - 119596
39916