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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1003403_1003752_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1003403 - 1003752
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTGTGCTTATCT
Flanking Amino Acid:
QQEIAALDNKIHETIETINQ
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
84.3
0.77
0.8
82
29.7
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
56
0.27
2.1
75.27
47.4

Associated Gene:

Gene:
SMARCD1
Ensembl Gene ID:
ENSAPLG00000006874
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017413
1001066 - 1008030
6965
ENSAPLT00000007172
1001066 - 1008030
6965