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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1003889_1004314_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1003889 - 1004314

Intron Length:

426

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACTG

5'SS Class:

strong_major

3'SS Sequence:

TGGATGCCCCTAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

AACTACTCACCT

Flanking Amino Acid:

PEPIIINHVISVDPNDQKKT

Intron Amino Acid Position:

375

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

71.5

40.2

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

57.5

0.17

47.5

41.5

Minor 5ss

30.1

-2.3

3.1

38.3

46.6

Minor BPS

47.3

-0.1

65.04

44.9

Associated Gene:

Gene:

SMARCD1

Ensembl Gene ID:

ENSAPLG00000006874

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017413

1001066 - 1008030

6965

ENSAPLT00000007172

1001066 - 1008030

6965