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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1004413_1004506_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1004413 - 1004506
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
GTTTCTGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
GTTTCTGGCACA
Flanking Amino Acid:
YVICDKYLQQIFESQRMKFS
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
69.8
0.44
1
64.3
41.5
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
44.7
-0.4
2.4
64.58
42

Associated Gene:

Gene:
SMARCD1
Ensembl Gene ID:
ENSAPLG00000006874
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017413
1001066 - 1008030
6965
ENSAPLT00000007172
1001066 - 1008030
6965