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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1004868_1005218_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1004868 - 1005218

Intron Length:

351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

CCACATATTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCACAT

U12 Branch Point Sequence:

TGTTCCACATAT

Flanking Amino Acid:

LYGPDNHLVEWHRTATTQET

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

78.3

32.5

Major BPS

65.1

0.38

1.1

71.2

35.2

Major PPT

68.4

0.41

58.1

41.4

Minor 5ss

-0.8

58.3

46.6

Minor BPS

46.7

-0.1

2.1

71.97

Associated Gene:

Gene:

SMARCD1

Ensembl Gene ID:

ENSAPLG00000006874

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017413

1001066 - 1008030

6965

ENSAPLT00000007172

1001066 - 1008030

6965