Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1005941_1006245_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1005941 - 1006245

Intron Length:

305

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

TAACACTGAACT

Flanking Amino Acid:

IQEALKRPIKQKRKLRIFIS

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

67.1

44.6

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

87.7

0.85

0.6

81.2

30.8

Minor 5ss

30.7

-2.2

3.4

40.1

Minor BPS

57.8

0.32

1.7

74.55

40.8

Associated Gene:

Gene:

SMARCD1

Ensembl Gene ID:

ENSAPLG00000006874

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017413

1001066 - 1008030

6965

ENSAPLT00000007172

1001066 - 1008030

6965