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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1006510_1007560_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1006510 - 1007560
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
CCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACAGTTTTAACA
Flanking Amino Acid:
QPQAVPNRNHNAKKKKMADK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
67.8
37.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
31.3
-2.1
3.6
41
39.9
Minor BPS
59.2
0.28
1.4
61.43
39.2

Associated Gene:

Gene:
SMARCD1
Ensembl Gene ID:
ENSAPLG00000006874
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017413
1001066 - 1008030
6965
ENSAPLT00000007172
1001066 - 1008030
6965