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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1007749_1007862_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1007749 - 1007862
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGGAG
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
RSPLPGAAYPRPGMLPGSRL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
51.7
46.6
Major BPS
44
-0.3
1.7
45
47.8
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
25.2
-2.9
3.1
30.3
42.8
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
SMARCD1
Ensembl Gene ID:
ENSAPLG00000006874
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007172
1001066 - 1008030
6965