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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1047685_1049019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1047685 - 1049019
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTATTTAATT
Flanking Amino Acid:
SRRTGPGRRLRKMEAATLNL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.4
0.53
1
69.4
41.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025543
1047431 - 1056032
8602