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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1048542_1049019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1048542 - 1049019
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
GGTTTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTATTTAATT
Flanking Amino Acid:
MQLNLKWKMEAATLNL
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1
64.2
35
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.4
0.53
1
69.4
41.7
Minor 5ss
39.1
-1.2
2.8
45.7
44.4
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045125
1048374 - 1055032
6659