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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1050263_1050467_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1050263 - 1050467
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTTCTAATT
Flanking Amino Acid:
QVSMGGSGNKRLSTIDESGS
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.1
38.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89.2
0.88
0.7
88.9
28.2
Minor 5ss
37.3
-1.4
3.1
47.6
48.1
Minor BPS
61.7
0.44
1.6
81.49
34

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025543
1047431 - 1056032
8602
ENSAPLT00000007292
1035010 - 1055032
20023
ENSAPLT00000046049
1037681 - 1055032
17352
ENSAPLT00000045125
1048374 - 1055032
6659