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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1050538_1050749_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1050538 - 1050749
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
TTATTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTACACTGAACT
Flanking Amino Acid:
ISFDKTDDSLDWDSSVVKAV
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
66.5
34.9
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
81.9
0.72
0.8
77
31.5
Minor 5ss
36.3
-1.6
3.3
43.5
46
Minor BPS
62.9
0.48
1.7
81.18
39.3

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046049
1037681 - 1055032
17352
ENSAPLT00000045125
1048374 - 1055032
6659
ENSAPLT00000025543
1047431 - 1056032
8602
ENSAPLT00000007292
1035010 - 1055032
20023