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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1051522_1051654_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1051522 - 1051654
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
CTCCTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CTGTCACTAACA
Flanking Amino Acid:
IRSIGSTADQGNESIVAKTT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
80.6
0.69
0.8
74.8
33.6
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
54.7
0.14
2
69.32
42.7

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046049
1037681 - 1055032
17352
ENSAPLT00000045125
1048374 - 1055032
6659
ENSAPLT00000025543
1047431 - 1056032
8602
ENSAPLT00000007292
1035010 - 1055032
20023