Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1052094_1052243_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1052094 - 1052243

Intron Length:

150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTCAG

5'SS Class:

major

3'SS Sequence:

TCTGAATCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

ATGTTCTGAATC

Flanking Amino Acid:

VRLHEFVSKTVIKPESCVPC

Intron Amino Acid Position:

319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

60.1

46.2

Major BPS

81.9

0.79

0.8

81.9

Major PPT

62.6

0.28

60.5

40.2

Minor 5ss

32.7

-2

3.2

45.3

Minor BPS

0.42

1.4

69.13

36.5

Associated Gene:

Gene:

RACGAP1

Ensembl Gene ID:

ENSAPLG00000006988

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045125

1048374 - 1055032

6659

ENSAPLT00000025543

1047431 - 1056032

8602

ENSAPLT00000007292

1035010 - 1055032

20023

ENSAPLT00000046049

1037681 - 1055032

17352