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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1052409_1052789_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1052409 - 1052789
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
AATACCTTATTT
Flanking Amino Acid:
LTGTPVQIGEGTLMDYVPSA
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
70
0.5
1
59.6
38.6
Major PPT
75.5
0.57
0.8
73.6
31.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
63.3
0.49
1.6
76.66
39.7

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007292
1035010 - 1055032
20023
ENSAPLT00000046049
1037681 - 1055032
17352
ENSAPLT00000045125
1048374 - 1055032
6659
ENSAPLT00000025543
1047431 - 1056032
8602