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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1052886_1053120_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1052886 - 1053120

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

TTTCTGTCAACA

Flanking Amino Acid:

NEIEQRGLHEMGLYRISGCD

Intron Amino Acid Position:

406

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.8

31.6

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

77.8

0.63

0.9

73.6

35.7

Minor 5ss

33.1

-1.9

2.9

41.4

44.7

Minor BPS

51.4

0.04

2.2

72.76

39.1

Associated Gene:

Gene:

RACGAP1

Ensembl Gene ID:

ENSAPLG00000006988

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045125

1048374 - 1055032

6659

ENSAPLT00000025543

1047431 - 1056032

8602

ENSAPLT00000007292

1035010 - 1055032

20023

ENSAPLT00000046049

1037681 - 1055032

17352