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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1053320_1053624_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1053320 - 1053624
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
CAGGTCTAAACA
Flanking Amino Acid:
RLNKTFMEAAEISDEDNSIA
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
77.5
0.62
0.7
69.3
31.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
48.7
-0.1
1.8
55.16
44.2

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045125
1048374 - 1055032
6659
ENSAPLT00000025543
1047431 - 1056032
8602
ENSAPLT00000007292
1035010 - 1055032
20023
ENSAPLT00000046049
1037681 - 1055032
17352