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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1053731_1053917_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1053731 - 1053917
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TCTTTAAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTTTAAAT
Flanking Amino Acid:
TLAFLMLHLQRVAQSPDTKM
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
70.7
35.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.4
0.5
0.9
67.3
37.3
Minor 5ss
47.1
-0.3
2.4
59.5
45
Minor BPS
85.3
1.19
1.1
97.3
26.5

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007292
1035010 - 1055032
20023
ENSAPLT00000046049
1037681 - 1055032
17352
ENSAPLT00000045125
1048374 - 1055032
6659
ENSAPLT00000025543
1047431 - 1056032
8602