About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1054051_1054181_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1054051 - 1054181
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GGTGTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTTCCTAACGT
Flanking Amino Acid:
LLQDTKRQPKVVERLLLLPV
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
72.3
0.5
0.9
66.2
40.8
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
48.3
-0
2.2
69.5
47.5

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046049
1037681 - 1055032
17352
ENSAPLT00000045125
1048374 - 1055032
6659
ENSAPLT00000025543
1047431 - 1056032
8602
ENSAPLT00000007292
1035010 - 1055032
20023