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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1054318_1054574_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1054318 - 1054574
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GCTCACTTGATT
Flanking Amino Acid:
FSTPQTPDVKVSMLGPLTTP
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.7
0.49
1
68.8
42.1
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
57.3
0.31
1.5
70.44
40.5

Associated Gene:

Gene:
RACGAP1
Ensembl Gene ID:
ENSAPLG00000006988
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007292
1035010 - 1055032
20023
ENSAPLT00000046049
1037681 - 1055032
17352
ENSAPLT00000045125
1048374 - 1055032
6659
ENSAPLT00000025543
1047431 - 1056032
8602