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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1109803_1109899_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

1109803 - 1109899

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGCCCG

5'SS Class:

major

3'SS Sequence:

CCGTGCGTGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACCAGAT

U12 Branch Point Sequence:

ATGACCAGATCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

Major BPS

52.7

0.07

1.1

48.6

36.6

Major PPT

58.7

0.2

1.1

41.5

Minor 5ss

34.5

-1.8

40.3

39.5

Minor BPS

44.2

-0.4

1.9

55.88

41.8

Associated Gene:

Gene:

HDAC7

Ensembl Gene ID:

ENSAPLG00000007048

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030570

1109121 - 1145304

36184