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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1110033_1132910_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1110033 - 1132910
Intron Length:
22878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TGTGTCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGATTCTCACCC
Flanking Amino Acid:
SALLGMFSPSSAVNPCTSPR
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.5
0.57
0.9
69
37.2
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
51.1
0.02
1.8
64.01
41.3

Associated Gene:

Gene:
HDAC7
Ensembl Gene ID:
ENSAPLG00000007048
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037485
1109121 - 1145304
36184
ENSAPLT00000030570
1109121 - 1145304
36184
ENSAPLT00000030418
1109121 - 1145304
36184