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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_112238_112616_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112238 - 112616
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
TTTTCCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AATTCAACCACT
Flanking Amino Acid:
RSEIDSVKKQCASLQTAIAD
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
82.1
0.72
0.7
74.2
30.9
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
42.5
-0.5
2.3
66.71
43.1

Associated Gene:

Gene:
KRT75
Ensembl Gene ID:
ENSAPLG00000026114
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029707
109722 - 113473
3752