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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1134725_1136463_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1134725 - 1136463
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
CTCCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CAGCTCTCAGCC
Flanking Amino Acid:
QILNKDKSKRSAVASTVVKQ
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
33.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.9
0.72
0.7
76.4
25.6
Minor 5ss
33.4
-1.9
3.4
43.5
37.7
Minor BPS
44.7
-0.4
1.7
48.91
41

Associated Gene:

Gene:
HDAC7
Ensembl Gene ID:
ENSAPLG00000007048
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037485
1109121 - 1145304
36184
ENSAPLT00000030570
1109121 - 1145304
36184
ENSAPLT00000030418
1109121 - 1145304
36184
ENSAPLT00000007431
1073999 - 1145304
71306
ENSAPLT00000047615
1120631 - 1145304
24674