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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1136579_1136739_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1136579 - 1136739
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CTTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GATCCTCTAACA
Flanking Amino Acid:
SNPNPSAMPYRSLEPLDPEG
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
83.3
0.75
0.7
77.4
24.5
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
57.9
0.24
1.7
68.05
37.5

Associated Gene:

Gene:
HDAC7
Ensembl Gene ID:
ENSAPLG00000007048
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007431
1073999 - 1145304
71306
ENSAPLT00000047615
1120631 - 1145304
24674
ENSAPLT00000037485
1109121 - 1145304
36184
ENSAPLT00000030570
1109121 - 1145304
36184
ENSAPLT00000030418
1109121 - 1145304
36184