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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1140071_1140499_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1140071 - 1140499
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
GGCGTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
AGGCCAGCAGCT
Flanking Amino Acid:
EQPTKPHFTTGLVYDSVMLK
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
72.7
0.51
1
65.2
41.2
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
35.4
-1
2.2
50.59
42.6

Associated Gene:

Gene:
HDAC7
Ensembl Gene ID:
ENSAPLG00000007048
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030570
1109121 - 1145304
36184
ENSAPLT00000030418
1109121 - 1145304
36184
ENSAPLT00000007431
1073999 - 1145304
71306
ENSAPLT00000047615
1120631 - 1145304
24674
ENSAPLT00000037485
1109121 - 1145304
36184