Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1143628_1143852_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1143628 - 1143852

Intron Length:

225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TGCTCACTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCATCAT

U12 Branch Point Sequence:

TTGCCCCTCACC

Flanking Amino Acid:

FFPGSGAADEVGAGPGEGFN

Intron Amino Acid Position:

802

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.8

35.2

Major BPS

63.3

0.33

1.2

65.6

39.7

Major PPT

71.6

0.49

0.9

62.1

38.9

Minor 5ss

28.4

-2.5

2.8

34.6

41.3

Minor BPS

0.01

2.1

68.8

42.6

Associated Gene:

Gene:

HDAC7

Ensembl Gene ID:

ENSAPLG00000007048

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037485

1109121 - 1145304

36184

ENSAPLT00000030570

1109121 - 1145304

36184

ENSAPLT00000030418

1109121 - 1145304

36184

ENSAPLT00000007431

1073999 - 1145304

71306

ENSAPLT00000047615

1120631 - 1145304

24674