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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1144178_1144362_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1144178 - 1144362
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
GTTTCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GGGGGCTGACAG
Flanking Amino Acid:
PLGGYKVSAKCFGYMTKQLM
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
66.4
44.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
79.1
0.66
0.8
73.6
31.4
Minor 5ss
34.1
-1.8
3.2
44.3
43.6
Minor BPS
34.4
-1.3
2
30.74
40.6

Associated Gene:

Gene:
HDAC7
Ensembl Gene ID:
ENSAPLG00000007048
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030570
1109121 - 1145304
36184
ENSAPLT00000030418
1109121 - 1145304
36184
ENSAPLT00000007431
1073999 - 1145304
71306
ENSAPLT00000047615
1120631 - 1145304
24674
ENSAPLT00000037485
1109121 - 1145304
36184