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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1144497_1144691_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1144497 - 1144691
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
CGTCCCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TTCCCCCTGACC
Flanking Amino Acid:
ACVSALLGNELDPLPEESMR
Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
69.4
0.44
1
64.9
36.3
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
60.8
0.32
1.7
72.54
38.5

Associated Gene:

Gene:
HDAC7
Ensembl Gene ID:
ENSAPLG00000007048
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030570
1109121 - 1145304
36184
ENSAPLT00000030418
1109121 - 1145304
36184
ENSAPLT00000007431
1073999 - 1145304
71306
ENSAPLT00000047615
1120631 - 1145304
24674
ENSAPLT00000037485
1109121 - 1145304
36184