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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1145109_1145258_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1145109 - 1145258
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGGGT
5'SS Class:
major
3'SS Sequence:
TTCTCCGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCCTCATCT
Flanking Amino Acid:
SLSVAVMVEKRPQDEPMEEE
Intron Amino Acid Position:
993

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
65.8
39.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
83.1
0.74
0.8
80.5
31.5
Minor 5ss
25.6
-2.8
3.5
38.3
46.7
Minor BPS
59
0.36
1.9
75.91
46.6

Associated Gene:

Gene:
HDAC7
Ensembl Gene ID:
ENSAPLG00000007048
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037485
1109121 - 1145304
36184
ENSAPLT00000030570
1109121 - 1145304
36184
ENSAPLT00000030418
1109121 - 1145304
36184
ENSAPLT00000007431
1073999 - 1145304
71306
ENSAPLT00000047615
1120631 - 1145304
24674