Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_118226_118639_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118226 - 118639

Intron Length:

414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

TGATGGGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

AATGCTTTAAAC

Flanking Amino Acid:

NNKFASFIDKVRFLEQQNKV

Intron Amino Acid Position:

130

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

33.2

Major BPS

82.1

0.8

71.6

36.4

Major PPT

0.38

1.1

61.7

48.4

Minor 5ss

39.7

-1.2

3.1

56.6

47.5

Minor BPS

0.36

1.5

67.19

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025066

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027058

117839 - 124305

6467