About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_118849_121337_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118849 - 121337
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
CCCCTTCCAACA
Flanking Amino Acid:
MQDAVEDFKIRYEEEINKRT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
69.9
0.45
0.8
65
29.2
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
41.5
-0.6
1.7
44.52
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025066
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027058
117839 - 124305
6467