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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1205198_1206508_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1205198 - 1206508
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCAAAC
U12 Branch Point Sequence:
AGCCACCAAACC
Flanking Amino Acid:
WRRRERLSTETPLLDTESSL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.8
38.8
Major BPS
48.4
-0.1
1
52.9
28.9
Major PPT
85.3
0.79
0.9
76.9
42.1
Minor 5ss
36.2
-1.6
3.2
46.7
48.6
Minor BPS
41.4
-0.6
2
49.05
40.3

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031885
1205144 - 1211854
6711